PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.12G066300.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family NF-YB
Protein Properties Length: 202aa    MW: 20771.9 Da    PI: 6.8863
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.12G066300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.81.6e-5821116297
                NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyr 91 
                          reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfe+yveplk+yl+kyr
  Manes.12G066300.1.p  21 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKIYLQKYR 110
                          89**************************************************************************************** PP

                NF-YB  92 elegek 97 
                          e+egek
  Manes.12G066300.1.p 111 EMEGEK 116
                          ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.9E-5616127IPR009072Histone-fold
SuperFamilySSF471131.86E-4123127IPR009072Histone-fold
PfamPF008085.9E-282690IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.2E-225472No hitNo description
PROSITE patternPS0068505773IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.2E-227391No hitNo description
PRINTSPR006158.2E-2292110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MADSDNESGG HNNAHSELSA REQDRFLPIA NVSRIMKKAL PANAKISKDA KETVQECVSE  60
FISFITGEAS DKCQREKRKT INGDDLLWAM TTLGFEEYVE PLKIYLQKYR EMEGEKSSLG  120
RQGEKDGAGG SGGGGAAASG GGSGGGVSSG GVGGAGGGFN GGGQGMYGGM MMMGHHQGHM  180
YGSGGYHHQM GVGKGGSGNS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_B2e-4918111194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4918111194NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4g91_B1e-4921111292Transcription factor HapC (Eurofung)
4g92_B1e-4921111292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003634760.11e-95PREDICTED: nuclear transcription factor Y subunit B-3
RefseqXP_010644567.11e-95PREDICTED: nuclear transcription factor Y subunit B-3
SwissprotO233106e-77NFYB3_ARATH; Nuclear transcription factor Y subunit B-3
TrEMBLA0A0H3XSM14e-99A0A0H3XSM1_VERFO; Nuclear transcription factor Y subunit B-11
STRINGVIT_19s0015g00440.t014e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59134150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.15e-77nuclear factor Y, subunit B3